ORTHOSCOPE v1.2.1
Gene tree and orthogroup estimation using a species tree (< 5 min as default). 9 Oct. 2020
Instructions, Species tree Support: Safari(latest), Firefox, Chrome Mirror: AORI

Focal group    
Actinopterygii Mammalia Vertebrata Deuterostomia Protostomia Acropora

Status
Ready.
 

Mode Tree Search Only Search/Rearrangement

Upload file Coding or amino acid sequence set
(fasta)
Species tree
(newick)
 
  Amino acid  DNA  Example If not selected, this tree is used.

Sequence collection
E-value threshold for reported sequences 1e-5   1e-4   1e-3   1e-2   1e-1   1
Number of hits to report per genome 3   5   10
Alignment
Aligned site rate threshold
 within unambiguously aligned sites
0   0.2   0.4   0.55
Tree search
Dataset Amino acid
  DNA (Exclude 3rd)   DNA (Include 3rd)
Rearrangement BS value threshold 60%   70%   80%

           
Genome taxon sampling Example.
  If the file is not uploaded, the following taxon sampling is used.
Bacteria          
 Cyanobacteria Prochlorococcus-marinus Cyanobacteria (MIT 9211) EnsBac42 1855
 Actinobacteria Corynebacterium-efficiens C.efficiens YS-314 EnsBac42 2998
  Streptomyces-coelicolor S.coelicolor A3(2) EnsBac42 8154
Archaea Methanocaldococcus-jannaschii Euryarchaeotes EnsBac42 1770
           
Eukaryota          
Viridiplantae Arabidopsis-thaliana Thale cress EnsPla42 27628
Sar Symbiodinium-microadriaticum Dinoflagellate EnsProt44 43403
Haptophyta Emiliania-huxleyi Coccolithophore EnsProt44 38544
           
Opisthokonta          
Fungi Sclerotinia-sclerotiorum Ascomycetes EnsFun42 10175
  Saccharomyces-cerevisiae Baker's yeast Ens92 6692
  Saccharomyces-cerevisiae-1 Baker's yeast RefSeq90 5983
Ichthyosporea Sphaeroforma-arctica RefSeq90 18213
  Capsaspora-owczarzaki RefSeq90 8621
Choanoflagellida Salpingoeca-rosetta Choanoflagellate RefSeq90 11624
  Monosiga-brevicollis Choanoflagellate RefSeq90 9171
Metazoa          
Ctenophora Mnemiopsis-leidyi American comb jelly EnsMet38 16058
Porifera Amphimedon-queenslandica Sponge EnsMet38 43615
Placozoa Trichoplax-adhaerens EnsMet38 11520
           
Bilateria          
Protostomia          
Spiralia          
  Rotifera Adineta-vaga Rotifer EnsMet39 49300
  Platyhelminthes Echinococcus-granulosus Hydatid worm RefSeq90 11319
  Opisthorchis-viverrini Southeast Asian liver fluke RefSeq90 16356
  Schistosoma-haematobium Urinary blood fluke RefSeq90 10837
  Schistosoma-mansoni Blood fluke EnsMet40 10772
  Annelida Capitella-teleta Polychaete worm EnsMet39 32175
  Helobdella-robusta Californian leech EnsMet39 23432
  Nemertea Notospermus-geniculatus Ribbon worm OIST-S 43294
  Phoronida Phoronis-australis Horseshoe worm OIST-S 20473
  Brachiopoda Lingula-anatina Lamp shell EnsMet38 34105
  Cephalopoda Octopus-bimaculoides California two-spotted octopus EnsMet38 33609
  Octopus-bimaculoides-1 California two-spotted octopus RefSeq 15842
  Octopus-vulgaris Common octopus RefSeq 18183
  Gastropoda Pomacea-canaliculata Golden apple snail RefSeq 21131
  Lottia-gigantea Giant owl limpet EnsMet38 23340
  Biomphalaria-glabrata Bloodfluke planorb NCBI 25539
  Aplysia-californica California sea hare RefSeq 19945
  Bivalvia Crassostrea-virginica Eastern oyster RefSeq 34596
  Crassostrea-gigas Pacific oyster EnsMet40 26089
  Mizuhopecten-yessoensis Ezo giant scallop RefSeq 24521
  Pinctada-fucata-1 Pearl oyster OIST-S v1 72595
  Pinctada-fucata Pearl oyster OIST-S v2 31477
Ecdysozoa          
  Priapulida Priapulus-caudatus Priapulid worm NCBI 15088
  Halicryptus-spinulosus TSA 4359
  Nematoda Trichinella-spiralis Trichina worm EnsMet39 16380
  Strongyloides-ratti Parasitic roundworm EnsMet39 12464
  Onchocerca-volvulus EnsMet39 12117
  Loa-loa Eye worm EnsMet39 14908
  Brugia-malayi Filarial nematode worm EnsMet39 11010
  Pristionchus-pacificus Parasitic nematode EnsMet39 29201
  Caenorhabditis-japonica Nematode worm EnsMet39 29931
  Caenorhabditis-brenneri Nematode worm EnsMet39 30674
  Caenorhabditis-remanei Nematode worm EnsMet39 31436
  Caenorhabditis-briggsae Nematode worm EnsMet39 22394
  Caenorhabditis-elegans Nematode worm EnsMet38 20222
  Caenorhabditis-elegans-1 Nematode worm RefSeq89 20090
  Chelicerata Limulus-polyphemus Atlantic horseshoe crab NCBI 22860
  Sarcoptes-scabiei Itch mite EnsMet38 10471
  Tetranychus-urticae Red spider mite EnsMet38 17671
  Ixodes-scapularis Blacklegged tick EnsMet38 20486
  Centruroides-sculpturatus Bark scorpion NCBI 24591
  Parasteatoda-tepidariorum House spider NCBI 18601
  Stegodyphus-mimosarum African social velvet spider EnsMet38 27135
  Myriapoda Strigamia-maritima European centipede EnsMet38 14992
  Crustacea          
   Decapoda Penaeus-vannamei Pacific white shrimp RefSeq100 24974
  Hyalella-azteca Amphipod crustacean RefSeq 18608
   Copepoda Eurytemora-affinis Copepod RefSeq 20716
  Lepeophtheirus-salmonis Salmon louse EnsMet39 13081
   Branchiopoda Daphnia-magna Water flea EnsMet39 26646
  Daphnia-pulex Water flea EnsMet39 30590
  Hexapoda          
     Paraneoptera Pediculus-humanus Human lice EnsMet38 10786
     Dictyoptera Zootermopsis-nevadensis Dampwood termite EnsMet39 14610
  Cryptotermes-secundus Drywood termite NCBI 12842
     Hemiptera Rhodnius-prolixus Triatomid bug EnsMet39 15064
  Acyrthosiphon-pisum Pea aphid EnsMet39 36195
     Hymenoptera Nasonia-vitripennis Parasitic wasp EnsMet39 17083
  Atta-cephalotes Leafcutter ant NCBI 10491
  Solenopsis-invicta Imported red fire ant NCBI 14453
  Apis-mellifera European honey bee EnsMet39 15314
  Bombus-impatiens Bumblebee EnsMet39 15896
  Bombus-terrestris Large earth bumblebee EnsMet39 10581
     Coleoptera Tribolium-castaneum Rust-red flour beetle EnsMet39 16590
  Anoplophora-glabripennis Asian long-horn beetle EnsMet39 22253
  Dendroctonus-ponderosae Mountain pine beetle EnsMet39 13088
     Lepidoptera Bombyx-mori Silkworm EnsMet38 14623
  Heliconius-melpomene Postman butterfly EnsMet39 12669
  Danaus-plexippus American monarch EnsMet39 15128
    Melitaea-cinxia Glanville fritillary EnsMet39 16629
     Diptera Belgica-antarctica Antarctic midge EnsMet39 13510
  Anopheles-darlingi African malaria mosquito EnsMet39 10509
  Culex-quinquefasciatus Southern house mosquito EnsMet39 18968
  Aedes-aegypti Yellow fever mosquito EnsMet39 15796
  Mayetiola-destructor Hessian fly EnsMet39 19927
  Megaselia-scalaris Humpbacked fly EnsMet39 11461
  Teleopsis-dalmanni Malaysian stalk-eyed fly EnsMet39 16570
  Lucilia-cuprina Australian sheep blowfly NCBI 15536
  Drosophila-grimshawi Fruit fly EnsMet39 13705
  Drosophila-mojavensis Fruit fly EnsMet39 13425
  Drosophila-virilis Fruit fly EnsMet39 13620
  Drosophila-willistoni Fruit fly EnsMet39 13783
  Drosophila-pseudoobscura Fruit fly EnsMet39 14574
  Drosophila-persimilis Fruit fly EnsMet39 16874
  Drosophila-ananassae Fruit fly EnsMet39 14365
  Drosophila-yakuba Fruit fly EnsMet39 14824
  Drosophila-erecta Fruit fly EnsMet39 13605
  Drosophila-simulans Fruit fly EnsMet39 14179
  Drosophila-sechellia Fruit fly EnsMet39 16465
  Drosophila-melanogaster Fruit fly EnsMet38 13931
  Drosophila-melanogaster-1 Fruit fly RefSeq89 13918
Xenacoelomorpha          
 Xenoturbella Xenoturbella-bocki Xenoturbella TSA 131373
 Nemertodermatida          
 Acoela Symsagittifera-roscoffensis Acoela TSA 107641
  Hofstenia-miamia Acoela TSA 45761
  Isodiametra-pulchra Acoela TSA 181811
  Praesagittifera-naikaiensis Acoela OIST-S 24410
           
Deuterostomia Select/open all      
Hemichordata Saccoglossus-kowalevskii Helical acorn worm OIST-R 34239
  Saccoglossus-kowalevskii-1 Helical acorn worm RefSeq89 20922
  Ptychodera-flava Yellow acorn worm OIST-S 34647
Echinodermata Strongylocentrotus-purpuratus Purple urchin EnsMet38 28842
  Strongylocentrotus-purpuratus-1 Purple urchin RefSeq89 27728
  Acanthaster-planci Crown-of-thorns starfish (Okinawa) OIST-S 24323
  Acanthaster-planci-1 Crown-of-thorns starfish (Okinawa) RefSeq89 16468
  Acanthaster-planci-GBR Crown-of-thorns starfish (Great Barrier Reef) OIST-S 24747
Cephalochordata Asymmetron-lucayanum Lancelet TSA 104311
  Branchiostoma-belcheri Belcher's lancelet LanceletDB 30392
  Branchiostoma-belcheri-1 Belcher's lancelet RefSeq89 23855
  Branchiostoma-lanceolatum Mediterranean amphioxus Amphiencode 23586
  Branchiostoma-floridae Florida lancelet JGI 21954
  Branchiostoma-floridae-1 Florida lancelet RefSeq89 28621
Urochordata          
 Appendicularia Oikopleura-dioica Pelagic tunicate OikoBase 17217
 Thaliacea Salpa-thompsoni Salpa TSA 76798
 Enterogona Ciona-savignyi Pacific transparent sea squirt Ens91 11616
  Ciona-savignyi-1 Pacific transparent sea squirt aNISEED 20115
  Ciona-intestinalis Transparent sea squirt Ens91 16671
  Ciona-intestinalis-1 Transparent sea squirt RefSeq89 13520
 Molgulidae Molgula-occidentalis aNISEED 33023
  Molgula-oculata Sea grape aNISEED 16616
 Styelidae Botrylloides-leachii Leache's ascidian aNISEED 15839
  Botryllus-schlosseri Golden star tunicate Stanford 30910
Vertebrata          
 Myxiniformes Eptatretus-burgeri Inshore hagfish Ens94 16513
 Petromyzontiformes Petromyzon-marinus Sea lamprey PMZv3.1 20950
 Chondrichthyes Callorhinchus-milii Elephant shark RefSeq89 17847
    Selachii Rhincodon-typus Whale shark RefSeq89 21868
    Batoidea Amblyraja-radiata-N Thorny skate RefSeq200601 18475
 Actinopterygii          
    Polypteriformes Erpetoichthys-calabaricus Reedfish RefSeq100 22167
    Lepisosteidae Lepisosteus-oculatus Spotted gar Ens91 18341
  Lepisosteus-oculatus-1 Spotted gar RefSeq89 18771
    Teleostei          
       Osteoglossomorpha Scleropages-formosus Asian arowana NCBI 22740
  Paramormyrops-kingsleyae Elephantfish NCBI 23862
       Clupeocephala          
          Otomorpha          
             Clupeiformes Denticeps-clupeoides Denticle herring RefSeq100 23474
  Clupea-harengus Atlantic herring NCBI 23701
             Otophysi Danio-rerio Zebrafish Ens91 25902
  Danio-rerio-1 Zebrafish RefSeq89 26587
  Carassius-auratus Goldfish RefSeq100 53052
  Sinocyclocheilus-grahami Golden-line barbel NCBI 45899
  Cyprinus-carpio Common carp NCBI 49264
  Electrophorus-electricus Electric eel RefSeq100 22026
  Tachysurus-fulvidraco Yellow catfish RefSeq100 23554
  Pangasianodon-hypophthalmus Striped catfish RefSeq100 21654
  Ictalurus-punctatus Channel catfish NCBI 22996
  Astyanax-mexicanus Blind cave fish Ens91 23042
  Pygocentrus-nattereri Red piranha NCBI 25562
          Protacanthopterygii Esox-lucius Northern pike NCBI 23798
  Salmo-salar Atlantic salmon NCBI 48593
  Salvelinus-alpinus Arctic char NCBI 36422
  Oncorhynchus-mykiss Rainbow trout NCBI 42737
  Oncorhynchus-tshawytscha Chinook salmon NCBI 42470
  Oncorhynchus-kisutch Coho salmon NCBI 36349
          Acanthomorphata          
             Gadiformes Gadus-morhua Atlantic cod Ens91 20095
             Gasterosteiformes Gasterosteus-aculeatus Three spined stickleback Ens91 20787
             Notothenioidei Notothenia-coriiceps Yellowbelly rockcod NCBI 24776
             Sciaenidae Larimichthys-crocea Croceine croaker NCBI 24779
             Labridae Labrus-bergylta Ballan wrasse NCBI 24748
             Tetraodontiformes Tetraodon-nigroviridis Spotted green pufferfish Ens91 19602
  Takifugu-rubripes Torafugu Ens91 18523
  Takifugu-rubripes-1 Torafugu RefSeq 21323
             Pleuronectiformes Cynoglossus-semilaevis Half-smooth tongue sole NCBI 21382
  Paralichthys-olivaceus Japanese flounder NCBI 23113
             Centropomidae Lates-calcarifer Barramundi perch NCBI 25329
             Carangiformes Seriola-lalandi-dorsalis Yellowtail amberjack NCBI 25789
  Seriola-dumerili Greater amberjack NCBI 22005
             Pomacentridae Stegastes-partitus Bicolor damselfish NCBI 22589
  Amphiprion-ocellaris Clown anemonefish NCBI 23512
  Acanthochromis-polyacanthus Spiny chromis NCBI 24580
             Cichlidae Oreochromis-niloticus Nile tilapia Ens91 21437
  Neolamprologus-brichardi Yretail cichlid NCBI 22678
  Pundamilia-nyererei Python island NCBI 22890
  Maylandia-zebra Zebra mbuna NCBI 25885
  Haplochromis-burtoni Burton's mouthbrooder NCBI 24002
             Syngnathiformes Hippocampus-comes Tiger tail seahorse NCBI 21175
             Gobiiformes Boleophthalmus-pectinirostris Great blue-spotted mudskipper NCBI 21391
             Synbranchiformes Monopterus-albus Swamp eel NCBI 21343
             Atherinomorpha Nothobranchius-furzeri Turquoise killifish NCBI 22194
  Austrofundulus-limnaeus NCBI 23805
  Cyprinodon-variegatus Sheepshead minnow NCBI 23264
  Fundulus-heteroclitus Atlantic killifish (Mummichog) NCBI 23511
  Xiphophorus-maculatus Southern platyfish Ens91 20379
  Poecilia-formosa Amazon molly Ens91 23615
  Poecilia-reticulata Guppy NCBI 22829
  Oryzias-melastigma Indian medaka Ens91 23157
  Oryzias-latipes Medaka Ens91 19699
  Oryzias-latipes-1 Medaka RefSeq89 22058
 Sarcopterygii          
   Latimeria Latimeria-chalumnae Coelacanth Ens91 19569
  Latimeria-chalumnae-1 Coelacanth RefSeq 20932
   Amphibia          
     Gymnophiona Rhinatrema-bivittatum Two-lined caecilian RefSeq100 21539
  Caecilia-tentaculata Guayaquil caecilian TSA 93723
  Typhlonectes-compressicauda Cayenne caecilian TSA 85502
  Microcaecilia-dermatophaga Tiny white caecilian TSA 62376
  Microcaecilia-unicolor Tiny Cayenne caecilian RefSeq100 20854
     Caudata Tylototriton-wenxianensis Wenxian knobby newt TSA 125603
     Anura Nanorana-parkeri High Himalaya frog RefSeq90 18945
  Xenopus-tropicalis Western clawed frog Ens91 18442
  Xenopus-tropicalis-1 Western clawed frog NCBI 21364
  Xenopus-laevis Clawed frog NCBI 31332
  Xenopus-laevis-1 Clawed frog RefSeq89 31332
  Lepidosauria          
     Sphenodontia Sphenodon-punctatus Tuatara Ens98 17648
     Squamata          
        Gekkonidae Gekko-japonicus Schlegel's Japanese gecko RefSeq 19463
        Unidentata          
           Laterata          
              Lacertidae Podarcis-muralis Common wall lizard RefSeq 21243
  Salvator-merianae Argentine black and white tegu Ens98 19342
           Toxicofera          
              Iguania Pogona-vitticeps Central bearded dragon NCBI 18891
  Anolis-carolinensis Green anole Ens91 18595
  Anolis-carolinensis-1 Green anole RefSeq89 19352
              Serpentes          
                 Henophidia Python-bivittatus Burmese python RefSeq 19793
                 Colubroidea Protobothrops-mucrosquamatus Taiwan habu NCBI 20001
  Protobothrops-flavoviridis Habu OIST-S 25134
  Thamnophis-sirtalis Common garter snake NCBI 18565
  Pseudonaja-textilis Eastern brown snake RefSeq100 19356
  Notechis-scutatus Mainland tiger snake RefSeq100 19768
  Archosauria          
   Testudines          
      Trionychidae Pelodiscus-sinensis Chinese soft-shelled turtle Ens91 18189
      Durocryptodira Chelonia-mydas Green seaturtle RefSeq 17747
  Chelonoidis-abingdonii Abingdon island giant tortoise Ens98 20204
  Terrapene-mexicana Mexican box turtle RefSeq89 21270
  Chrysemys-picta Painted turtle NCBI 21077
   Crocodylia Crocodylus-porosus Estuarine crocodile RefSeq89 14704
  Gavialis-gangeticus True gharial RefSeq89 14302
  Alligator-mississippiensis American alligator NCBI 18942
  Alligator-sinensis Chinese alligator NCBI 18583
   Aves          
     Palaeognathae          
        Struthioniformes Struthio-camelus African ostrich RefSeq90 14577
        Tinamiformes Tinamus-guttatus White-throated tinamou RefSeq90 15723
  Nothoprocta-perdicaria Chilean tinamou RefSeq90 15074
        Apterygiformes Apteryx-rowi Okarito brown kiwi RefSeq90 15883
  Apteryx-australis Brown kiwi RefSeq90 16251
        Casuariiformes Dromaius-novaehollandiae Emu RefSeq90 15541
     Neognathae          
        Galloanseres          
           Anseriformes Anser-cygnoides Swan goose RefSeq90 14696
  Anas-platyrhynchos Mallard duck Ens91 15634
  Anas-platyrhynchos-1 Mallard duck RefSeq90 14939
           Galliformes Meleagris-gallopavo Turkey Ens91 14123
  Meleagris-gallopavo-1 Turkey RefSeq90 18465
  Coturnix-japonica Japanese quail RefSeq90 16024
  Gallus-gallus-E99 Chicken Ens99 16878
  Gallus-gallus Chicken Ens91 18346
  Gallus-gallus-1 Chicken RefSeq90 17465
        Neoaves          
           Columbiformes Columba-livia Rock pigeon RefSeq90 15562
           Ciconiiformes Pterocles-gutturalis Yellow-throated sandgrouse RefSeq90 14859
           Musophagiformes Tauraco-erythrolophus Red-crested turaco RefSeq90 14922
           Cuculiformes Cuculus-canorus Common cuckoo RefSeq90 14727
           Caprimulgiformes Antrostomus-carolinensis Chuck-will's-widow RefSeq90 15451
           Apodiformes Calypte-anna Anna's hummingbird RefSeq90 14543
  Chaetura-pelagica Chimney swift RefSeq90 14111
           Opisthocomiformes Opisthocomus-hoazin Hoatzin RefSeq90 13333
           Gruiformes Chlamydotis-macqueenii Macqueen's bustard RefSeq90 14661
  Mesitornis-unicolor Brown roatelo RefSeq90 15561
  Eurypyga-helias Sunbittern RefSeq90 14721
  Balearica-regulorum Grey crowned-crane RefSeq90 15006
           Charadriiformes Calidris-pugnax Ruff RefSeq90 16523
  Charadrius-vociferus Killdeer RefSeq90 14465
           Aequornithia          
              Gaviiformes Gavia-stellata Gharial RefSeq90 14665
              Sphenisciformes Pygoscelis-adeliae Adelie penguin RefSeq90 13734
  Aptenodytes-forsteri Emperor penguin RefSeq90 14550
              Procellariiformes Fulmarus-glacialis Northern fulmar RefSeq90 15108
              Pelecaniformes          
              Phaethontidae Phaethon-lepturus White-tailed tropicbird RefSeq90 15065
              Phalacrocoracidae Phalacrocorax-carbo Great cormorant RefSeq90 14394
              Ciconiiformes Pelecanus-crispus Dalmatian pelican RefSeq90 15254
  Nipponia-nippon Crested ibis RefSeq90 15018
  Egretta-garzetta Little egret RefSeq90 14127
           Strigiformes Athene-cunicularia Burrowing owl RefSeq90 13841
  Tyto-alba Barn owl RefSeq90 13915
           Coliiformes Colius-striatus Speckled mousebird RefSeq90 14900
           Trogoniformes Apaloderma-vittatum Bar-tailed trogon RefSeq90 14307
           Bucerotiformes Buceros-rhinoceros Rhinoceros hornbill RefSeq90 14401
           Coraciiformes Leptosomus-discolor Cuckoo roller RefSeq90 15196
  Merops-nubicus Carmine bee-eater RefSeq90 14559
           Piciformes Picoides-pubescens Downy woodpecker RefSeq90 14136
           Cariamiformes Cariama-cristata Red-legged seriema RefSeq90 14999
           Falconiformes Falco-cherrug Saker falcon RefSeq90 14695
  Falco-peregrinus Peregrine falcon RefSeq90 14847
  Aquila-chrysaetos Golden eagle RefSeq90 15637
  Haliaeetus-leucocephalus Bald eagle RefSeq90 15212
  Haliaeetus-albicilla White-tailed eagle RefSeq90 14895
           Psittaciformes Nestor-notabilis Kea RefSeq90 14740
  Melopsittacus-undulatus Budgerigar RefSeq90 14243
           Acanthisittidae Acanthisitta-chloris Rifleman RefSeq90 15052
           Corvidae Corvus-cornix Hooded crow RefSeq90 13622
  Corvus-brachyrhynchos American crow RefSeq90 14927
           Paridae Cyanistes-caeruleus Blue tit RefSeq90 16519
  Pseudopodoces-humilis Tibetan ground-tit RefSeq90 15801
  Parus-major Great tit RefSeq90 15240
           Muscicapidae Ficedula-albicollis Collared flycatcher Ens91 15303
  Ficedula-albicollis-1 Collared flycatcher RefSeq90 15387
           Sturnidae Sturnus-vulgaris Common starling RefSeq90 15233
           Passeroidea          
              Fringillidae Serinus-canaria Common canary RefSeq90 15584
              Pipridae Manacus-vitellinus Golden-collared manakin RefSeq90 16312
  Lepidothrix-coronata Blue-crowned manakin RefSeq90 15382
              Passerellidae Zonotrichia-albicollis White-throated sparrow RefSeq90 14377
              Thraupidae Geospiza-fortis Medium ground-finch RefSeq90 14183
              Estrildidae Taeniopygia-guttata Zebra finch Ens91 17488
  Taeniopygia-guttata-1 Zebra finch RefSeq90 16362
  Lonchura-striata White-rumped munia RefSeq90 15420
   Mammalia          
     Ornithorhynchus Ornithorhynchus-anatinus Platypus Ens92 21698
     Marsupialia Monodelphis-domestica Gray short-tailed opossum Ens92 21327
  Sarcophilus-harrisii Tasmanian devil Ens92 18788
  Notamacropus-eugenii Tammar wallaby Ens92 15290
  Vombatus-ursinus Common wombat Ens98 21203
  Phascolarctos-cinereus Koala Ens98 19833
     Xenarthra Dasypus-novemcinctus Nine-banded armadillo Ens92 22711
  Choloepus-hoffmanni Hoffmann's two-fingered sloth Ens92 12393
     Afrotheria          
         Afroinsectiphilia          
           Macroscelidea Elephantulus-edwardii Cape elephant shrew RefSeq 20443
           Tubulidentata Orycteropus-afer Aardvark NCBI 19498
           Chrysochloridae Chrysochloris-asiatica Cape golden mole RefSeq 19625
           Tenrecidae Echinops-telfairi Madagascar hedgehog Ens92 16575
         Paenungulata          
           Hyracoidea Procavia-capensis Cape rock hyrax Ens92 16057
           Proboscidea Loxodonta-africana African elephant Ens92 20033
           Sirenia Trichechus-manatus Florida manatee NCBI 19095
     Laurasiatheria          
       Eulipotyphla          
          Erinaceidae Erinaceus-europaeus Western European hedgehog Ens92 14601
          Soricidae Sorex-araneus European shrew Ens92 13187
          Talpidae Condylura-cristata Star-nosed mole RefSeq 17882
       Chiroptera          
          Yinpterochiroptera          
             Rhinolophoidea Hipposideros-armiger Great roundleaf bat RefSeq 18949
  Rhinolophus-sinicus Chinese rufous horseshoe bat RefSeq 21417
             Pteropodidae Rousettus-aegyptiacus Egyptian fruit bat RefSeq 19412
  Pteropus-alecto Black flying fox RefSeq 18350
  Pteropus-vampyrus Large flying fox Ens92 16990
          Yangochiroptera          
             Phyllostomidae Desmodus-rotundus Common vampire bat RefSeq 18618
  Phyllostomus-discolor Pale spear-nosed bat RefSeq 19080
             Vespertilionidae Miniopterus-natalensis Natal long-fingered bat RefSeq 18161
  Eptesicus-fuscus Big brown bat RefSeq 18733
  Myotis-lucifugus Little brown bat Ens92 19728
       Perissodactyla          
          Rhinocerotidae Ceratotherium-simum White rhinoceros NCBI 19971
          Equidae Equus-asinus-asinus Donkey Ens98 19963
  Equus-caballus Horse Ens92 20449
  Equus-przewalskii Przewalski's horse RefSeq 21351
       Pholidota Manis-javanica Malayan pangolin NCBI 21289
       Carnivora          
          Feliformia          
             Herpestidae Suricata-suricatta Meerkat RefSeq 19608
             Felidae          
                Pantherinae Panthera-pardus Leopard Ens98 19690
  Panthera-pardus-1 Leopard RefSeq 20305
  Panthera-tigris-altaica Tiger Ens98 17546
  Panthera-tigris-altaica-1 Tiger RefSeq 18496
                Felinae Lynx-canadensis Lynx RefSeq 19417
  Acinonyx-jubatus Cheetah RefSeq 19655
  Puma-concolor Cougar RefSeq 17646
  Felis-catus Domestic cat Ens98 19587
  Felis-catus-R Domestic cat RefSeq 20374
          Caniformia          
             Canidae Vulpes-vulpes Red fox Ens98 20306
  Canis-lupus Grey wolf RefSeq 20248
  Canis-familiaris Dog Ens92 19856
             Mustelidae Enhydra-lutris Sea otter RefSeq 19327
  Neovison-vison American mink Ens98 19619
  Mustela-putorius-furo Ferret Ens92 19910
             Ursidae Ailuropoda-melanoleuca Giant panda Ens92 19343
  Ursus-americanus American black bear Ens98 20568
  Ursus-arctos Brown bear RefSeq 19835
  Ursus-maritimus Polar bear NCBI 19379
             Phocidae Neomonachus-schauinslandi-1 Hawaiian monk seal RefSeq 18806
  Leptonychotes-weddellii Weddell seal RefSeq 20535
             Odobenidae Odobenus-rosmarus-1 Walrus RefSeq 19399
             Otariidae Zalophus-californianus California sea lion RefSeq 19604
  Eumetopias-jubatus Steller sea lion RefSeq 19655
  Callorhinus-ursinus Northern fur seal RefSeq 21619
       Cetartiodactyla          
         Camelidae Vicugna-pacos Alpaca Ens92 11765
  Camelus-bactrianus Bactrian camel NCBI 19158
  Camelus-dromedarius Dromedary camel RefSeq 20049
         Suidae Sus-scrofa Pig Ens92 22452
  Sus-scrofa-1 Pig RefSeq89 20679
         Ruminantia          
            Cervidae Odocoileus-virginianus White-tailed deer NCBI 21059
            Bovidae          
               Antilopinae Pantholops-hodgsonii Tibetan antelope RefSeq 25481
  Ovis-aries Domestic sheep Ens92 20921
  Capra-hircus Domestic goat Ens92 21361
               Bovinae Bubalus-bubalis Water buffalo NCBI 21532
  Bison-bison American bison NCBI 20644
  Bos-mutus Wild yak Ens98 20850
  Bos-taurus Domestic cow Ens92 19994
  Bos-taurus-1 Domestic cow RefSeq89 21077
         Cetacea          
            Odontoceti Balaenoptera-acutorostrata Minke whale NCBI 18400
            Mysticeti          
               Physeteridae Physeter-catodon Sperm whale NCBI 19034
               Lipotidae Lipotes-vexillifer Yangtze River dolphin NCBI 18877
               Phocoenidae Neophocaena-asiaeorientalis Narrow-ridged Finless Porpoise RefSeq 18247
               Monodontidae Monodon-monoceros Narwhal RefSeq 18377
  Delphinapterus-leucas Beluga whale RefSeq 18456
               Delphinidae Lagenorhynchus-obliquidens Pacific white-sided dolphin RefSeq 18409
  Orcinus-orca Killer whale NCBI 18129
  Globicephala-melas Long-finned pilot whale RefSeq 18542
  Tursiops-truncatus Bottlenose-dolphin Ens92 16550
     Euarchontoglires          
       Scandentia Tupaia-belangeri Common tree shrew Ens92 15471
  Tupaia-chinensis Chinese tree shrew RefSeq 21077
       Glires          
         Lagomorpha Oryctolagus-cuniculus Domestic rabbit Ens92 19293
  Ochotona-princeps Southern American pika Ens92 16006
         Rodentia          
           Sciuridae Marmota-flaviventris Yellow-bellied marmot RefSeq 20271
  Marmota-marmota Alpine marmot RefSeq 20931
  Urocitellus-parryii Arctic ground squirrel RefSeq 19359
  Ictidomys-tridecemlineatus Thirteen-lined ground squirrel Ens92 11525
           Hystricomorpha          
              Bathyergidae Fukomys-damarensis Damara mole rat Ens92 17730
  Heterocephalus-glaber Naked mole rat (female) Ens92 20774
              Octodontidae Octodon-degus Degu Ens92 19982
              Chinchillidae Chinchilla-lanigera Long-tailed chinchilla Ens92 17809
              Caviidae Cavia-porcellus Guinea pig Ens92 18095
  Cavia-aperea Brazilian guinea pig Ens92 14218
           Mouse-related          
              Heteromyidae Dipodomys-ordii Ord's kangaroo rat Ens92 16911
              Myomorpha          
                 Dipodidae Jaculus-jaculus Egyptian jerboa Ens92 17845
                 Muroidea          
                    Spalacidae Nannospalax-galili Upper Galilee mountains blind mole rat Ens92 18647
                    Cricetidae Peromyscus-maniculatus-bairdii North American deer mouse Ens92 19854
  Cricetulus-griseus Chinese hamster (CHOK1GS-HDv1) Ens92 20824
                    Muridae Rattus-norvegicus Norway rat Ens92 22250
  Rattus-norvegicus-1 Norway rat RefSeq89 23401
  Mus-pahari Gairdner's shrew-mouse Ens92 19611
  Mus-spretus Algerian mouse Ens92 20168
  Mus-musculus House mouse Ens91 22798
  Mus-musculus-1 House mouse RefSeq89 22070
     Dermoptera Galeopterus-variegatus Malayan flying lemur RefSeq 22821
     Primates          
       Strepsirrhini Otolemur-garnettii Small-eared galago Ens92 19506
  Microcebus-murinus Gray mouse lemur NCBI 20509
  Propithecus-coquereli Propithecus coquereli Ens92 17925
  Prolemur-simus Greater bamboo lemur Ens98 20354
       Haplorrhini          
         Tarsiiformes Carlito-syrichta Philippine tarsier Ens92 18398
         Simiiformes          
           Platyrrhini Aotus-nancymaae Ma's night monkey Ens92 20412
  Callithrix-jacchus Common marmoset Ens92 19690
  Cebus-capucinus White-faced capuchin Ens92 20317
  Saimiri-boliviensis-boliviensis Bolivian squirrel monkey Ens92 19380
           Catarrhini          
             Cercopithecidae          
               Colobinae Colobus-angolensis-palliatus Peters' Angolan colobus Ens91 20617
  Rhinopithecus-roxellana Golden snub-nosed monkey Ens91 21289
  Rhinopithecus-bieti Black snub-nosed monkey Ens91 20966
               Cercopithecinae Chlorocebus-sabaeus Green monkey Ens91 19165
  Papio-anubis Kenya baboon Ens91 21647
  Cercocebus-atys Sooty mangabey Ens91 20926
  Mandrillus-leucophaeus Drill Ens91 20841
  Macaca-nemestrina Pigtail macaqu Ens91 21060
  Macaca-fascicularis Crab eating macaque Ens91 21584
  Macaca-mulatta Rhesus macaque Ens91 21099
             Hominoidea          
               Hylobatidae Nomascus-leucogenys White-cheeked Gibbon Ens92 20794
               Hominidae Pongo-abelii Orangutan Ens92 20424
  Gorilla-gorilla Western gorilla Ens92 21794
  Pan-troglodytes Chimpanzee Ens92 23534
  Pan-paniscus Pygmy chimpanzee Ens92 21210
  Homo-sapiens-E99 Human Ens99 23485
  Homo-sapiens Human Ens91 23070
  Homo-sapiens-1 Human RefSeq89 20101
Cnidaria        
  Myxozoa Thelohanellus-kitauei Myxosporean EnsMet38 15020
  Hydrozoa Hydra-vulgaris Hydra RefSeq 20042
  Cubozoa Morbakka-virulenta Cubozoan jellyfish OIST-S 28983
  Scyphozoa Aurelia-aurita-P Moon jelly(Pacific) OIST-S 37462
  Aurelia-aurita-A Moon jelly(Atlantic) OIST-S 38008
  Anthozoa          
   Actiniaria          
    Aiptasiidae Exaiptasia-pallida Sea anemone NCBI 22199
  Nematostella-vectensis Starlet sea anemone EnsMet38 24773
  Nematostella-vectensis-1 Starlet sea anemone RefSeq 24773
   Corallimorpharia Amplexidiscus-fenestrafer Coral anemones REEF
GENOMICS
21372
  Discosoma-spp Coral anemones REEF
GENOMICS
23199
   Scleractinia          
    Merulinidae Orbicella-faveolata Mountainous star coral RefSeq 25916
    Pocilloporidae Stylophora-pistillata Hood coral RefSeq 24833
    Acroporidae Astreopora spp. Acroporid coral AA, Coding 28711
  Montipora-efflorescens Acroporid coral AA, Coding 21369
  Montipora-cactus Acroporid coral AA, Coding 21982
  Acropora-tenuis Acroporid coral AA, Coding 23118
  Acropora-yongei Acroporid coral AA, Coding 23500
  Acropora-gemmifera Acroporid coral AA, Coding 22247
  Acropora-florida Acroporid coral AA, Coding 23857
  Acropora-awi Acroporid coral AA, Coding 22653
  Acropora-intermedia Acroporid coral AA, Coding 23343
  Acropora-acuminata Acroporid coral AA, Coding 22306
  Acropora-nasta Acroporid coral AA, Coding 23319
  Acropora-microphthalma Acroporid coral AA, Coding 22618
  Acropora-digitifera Acroporid coral RefSeq 26060
  Acropora-digitifera-1 Acroporid coral AA, Coding 22326
  Acropora-echinata Acroporid coral AA, Coding 43886
  Acropora-muricata Acroporid coral AA, Coding 23646
  Acropora-selago Acroporid coral AA, Coding 23115
  Acropora-hyacinthus Acroporid coral AA, Coding 23147
  Acropora-cytherea Acroporid coral AA, Coding 23363

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