################ Results ################

>Gene_tree_newick
(Callorhinchus-milii_3_KI635862.1-c11063513-11063407_ENSCMIG00000018083_113:0.004720876289,((Rhincodon-typus-N_v2_NW018079078.1-c8870-8682_NONE_93:0,Rhincodon-typus-N_v2_NW018079077.1-c171714-171526_NONE_93:0)NA:0.0954217119,(Monodelphis-domestica_monDom5_5-267764407-267764766_ENSMODG00000009625_292:0.1354178591,(Latimeria-chalumnae_LatCha1_JH126652.1-1381848-1382058_rcn1_202:0.0857379376,((Erpetoichthys-calabaricus_1_2-56485155-56485333_ENSECRG00000004293_121:0.07005629435,Lepisosteus-oculatus_LepOcu1_LG27-c9543984-9543811_rcn1_92:0.1698149568)NA:0.1206063108,((Alligator-mississippiensis-N_ASM28112v4_NW017713697.1-28613573-28613930_NONE_366:0.01726922227,(Chelonoidis-abingdonii_ASM359739v1_PKMU01004445.1-657405-657760_ENSCABG00000012666_340:0.02578547822,((Sphenodon-punctatus_ASM311381v1_QEPC01008061.1-c678962-678605_ENSSPUG00000004587_348:0.0240783253,Gallus-gallus_GRCg6a_5-5549364-5549721_ENSGALG00000012121_348:0.01287991435)NA:0.002110507099,(Nothoprocta-perdicaria_notPer1_PTEW01000029.1-c3229847-3229490_ENSNPEG00000007456_354:0.004672840787,(Calidris-pugnax_ASM143184v1_KQ482227.1-1598439-1598796_ENSCPUG00000017141_348:0.003318886451,(Callorhinchus-milii_3_KI635862.1-c11063251-11063165_ENSCMIG00000018083_49:0.2261615928,(Podarcis-muralis-N_PodMur10_NC041312.1-66438552-66438904_NONE_262:0.02055061636,(Anolis-carolinensis_0_1-60928958-60929309_ENSACAG00000002439_259:0.02406992375,(Python-bivittatus-N_502_NW006532569.1-c64846-64501_NONE_224:0.02343395022,(Protobothrops-mucrosquamatus-N_1-0_NW015388637.1-35764-36116_NONE_226:0.01493490756,(Thamnophis-sirtalis-N_6-0_NW013657925.1-495263-495614_NONE_199:0.01616202246,(Pseudonaja-textilis-N_EBS10Xv2-PRI_NW020769309.1-c4498305-4497956_NONE_203:0.001562434384,Notechis-scutatus_TS10Xv2-PRI_ULFQ01000010.1-15465633-15465982_ENSNSUG00000012105_192:0.01363227225)NA:0.01538828101)NA:0.01252370057)NA:0.005621302114)NA:0.03026714844)NA:0.009666775338)NA:0.02956730649)NA:0.03273307298)NA:0.002510920454)NA:0.004352654282)NA:0.006443199438)NA:0.003846278714)NA:0.007489981887,(Microcaecilia-unicolor-N_aMicUni1-1_NC044034.1-c140702400-140702101_NONE_150:0.1500618092,((Ornithorhynchus-anatinus_OANA5_3-18049134-18049492_ENSOANG00000015148_329:0.004010381608,Ornithorhynchus-anatinus_OANA5_Contig37440-2286-2643_NONE_325:0.001991931154)NA:0.08209332541,((Nannospalax-galili_0_KL199188.1-5304329-5304676_Rcn1_404:0.03289719371,Mus-musculus_GRCm38_2-c105435874-105435528_Rcn1_398:0.06814236842)NA:0.07031260865,(Choloepus-hoffmanni_choHof1_scaffold4405-c28676-28342_NONE_515:0.03126534871,(Condylura-cristata-N_ConCri1-0_NW004567116.1-c18297429-18297077_NONE_537:0.01855221105,(Propithecus-coquereli_0_KQ022625.1-c4932959-4932613_ENSPCOG00000015851_545:0.009632392537,((Myotis-lucifugus_0_GL429859-3848072-3848418_ENSMLUG00000009140_506:0.04075488543,(Equus-caballus_0_7-100006312-100006657_RCN1_432:0.09413743177,Bos-taurus_2_15-62798814-62799163_RCN1_484:0.02925565584)NA:0.01678682625)NA:0.006206970717,(Chrysochloris-asiatica-N_ChrAsi1-0_NW006408590.1-7614223-7614573_NONE_422:0.1231814233,(Aotus-nancymaae_0_KZ197012.1-7312960-7313308_ENSANAG00000027955_576:0.02701460663,(Homo-sapiens_GRCh38_11-32041336-32041684_RCN1_630:0,YOURSEQ1_agCNE1_Homo-sapiens-hg19_GRCh37_11-32062882-32063230:0)NA:0.009965363695)NA:0.005940712794)NA:0.01234271973)NA:0.003009800636)NA:0.005548277329)NA:0.00783672617)NA:0.006502938902)NA:0.06711364082)NA:0.02118576428)NA:0.005606908444)NA:0.02233895887)NA:0.02601317888)NA:0.00812528596)NA:0.1205674007)NA:0)NA;




################ Settings ################

>Uploaded_your_sequences
agCNE1_Homo-sapiens-hg19_GRCh37_11-32062882-32063230
TGTCATTGCCACCATTGTCTCTTGTCACAATCCTAATTCTATGTTCTGATAATAAAACTTCATTAGTGTCTGCACCTCCTTTCCCGTACCTTTGAAACACTGTCTTCTGCTGAAACGATTAGCAGTGCGCTGCGTCAGATCATCCGGCTGTCTGACAGCCATTGTGAGTGAGCTAAATTGTGAGAAAATGAAAATTTCTGACAATTTCCATTATTGTCAAATGGAGATATTTACTTGTACAAATATTAAAGGTTATTTAAAGATGTAAACGGACTTCATTTCATTAGTGGTATGCATCAGGTAATAATTTAAAACAACTACCCAGCCTCATTCAAATAAATTACCAATT

>taxonSampling_color
Callorhinchus-milii_Black
Rhincodon-typus-N_Black
Erpetoichthys-calabaricus_Green
Lepisosteus-oculatus_Green
Danio-rerio_Green
Gasterosteus-aculeatus_Green
Tetraodon-nigroviridis_Green
Oryzias-latipes_Green
Latimeria-chalumnae_Purple
Microcaecilia-unicolor-N_Purple
Xenopus-tropicalis_Purple
Sphenodon-punctatus_Orange
Podarcis-muralis-N_Orange
Anolis-carolinensis_Orange
Python-bivittatus-N_Orange
Protobothrops-mucrosquamatus-N_Orange
Thamnophis-sirtalis-N_Orange
Pseudonaja-textilis-N_Orange
Notechis-scutatus_Orange
Chelonoidis-abingdonii_Magenta
Alligator-mississippiensis-N_Magenta
Nothoprocta-perdicaria_Magenta
Gallus-gallus_Magenta
Calidris-pugnax_Magenta
Ornithorhynchus-anatinus_Blue
Monodelphis-domestica_Blue
Choloepus-hoffmanni_Blue
Chrysochloris-asiatica-N_Red
Condylura-cristata-N_Red
Myotis-lucifugus_Blue
Equus-caballus_Blue
Bos-taurus_Blue
Heterocephalus-glaber-male_Red
Nannospalax-galili_Red
Mus-musculus_Blue
Propithecus-coquereli_Blue
Aotus-nancymaae_Blue
Homo-sapiens_Blue

>E-value_threshold_for_reported_sequences
1e-3

>Number_of_hits_to_report_per_genome
2

>TreeSearchMethod
Neighbor-joining method (Saitou and Nei 1986)

>SubstitutionModel
TN93 (Tamura and Nei 1993) + gamma

>Dependencies
BLAST 2.7.1+
MAFFT v7.356b
trimAl 1.2rev59
ape in R, Version: 5.0

### Deleted
>Callorhinchus-milii_3_KI635862.1-c11063251-11063165_ENSCMIG00000018083_49
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAAGCTGA--CTTATG--TTATTAGTGGTTTATACCATATGGTAATTAAAAATGACTGAATGGGCCTTATTTAAATAAATTACCAATT
