################ Results ################

>Gene_tree_newick
(Callorhinchus-milii_3_KI635862.1-c11068128-11067509_ENSCMIG00000018083_663:0.03233080944,(Rhincodon-typus-N_v2_NW018079078.1-c30342-29725_NONE_670:0.03053180158,((Erpetoichthys-calabaricus_1_2-56438625-56439249_ENSECRG00000004293_735:0.03712042249,Lepisosteus-oculatus_LepOcu1_LG27-c9547938-9547315_rcn1_767:0.0214017068)NA:0.01540148969,(Latimeria-chalumnae_LatCha1_JH126652.1-1371187-1371811_rcn1_766:0.04479549768,(Danio-rerio_GRCz11_25-15072609-15072910_pax6a_346:0.04947736281,(Danio-rerio_GRCz11_25-15072251-15072464_pax6a_103:0.443540417,(Choloepus-hoffmanni_choHof1_scaffold23039-c3496-2877_NONE_1006:0.01725484019,(Myotis-lucifugus_0_GL429859-3839511-3840129_ENSMLUG00000009140_1031:0.01434547413,((Condylura-cristata-N_ConCri1-0_NW004567116.1-c18302962-18302345_NONE_1019:0.01782161355,Bos-taurus_2_15-62788984-62789604_RCN1_974:0.03130329225)NA:0.00101340947,((Propithecus-coquereli_0_KQ022625.1-c4941625-4941006_ENSPCOG00000015851_1042:0.01751056399,(Aotus-nancymaae_0_KZ197012.1-7301836-7302455_ENSANAG00000027955_1083:0.002662086183,(Homo-sapiens_GRCh38_11-32031078-32031697_RCN1_1119:0,YOURSEQ1_agCNE2_Homo-sapiens-hg19_GRCh37_11-32052624-32053243:0)NA:0.01053144173)NA:0.001011716641)NA:0.003026182966,((Chrysochloris-asiatica-N_ChrAsi1-0_NW006408590.1-7597970-7598590_NONE_1027:0.01706652321,Nannospalax-galili_0_KL199188.1-5296444-5297060_Rcn1_1006:0.01649389064)NA:0.002616691776,(Equus-caballus_0_7-99998407-99999021_RCN1_956:0.03677519649,((Heterocephalus-glaber-male_0_JH173915.1-848248-848867_ENSHGLG00100011830_1011:0.02099522264,Mus-musculus_GRCm38_2-c105448179-105447561_Rcn1_1031:0.01250895239)NA:0.001951512869,(Monodelphis-domestica_monDom5_5-267742398-267743017_ENSMODG00000009625_895:0.03529780763,(((Microcaecilia-unicolor-N_aMicUni1-1_NC044034.1-c140723304-140722684_NONE_667:0.08549504374,Ornithorhynchus-anatinus_OANA5_Ultra43-c272924-272857_NKD2_54:0.06223781127)NA:0.01037850552,((Xenopus-tropicalis_v91_4-c9759110-9758467_fgf11_421:0.1140700565,(Gasterosteus-aculeatus_BROADS1_groupXIX-1308516-1308623_ENSGACG00000002487_79:0.04979350292,Tetraodon-nigroviridis_TETRAODON8_Unrandom-21877115-21877223_ENSTNIG00000004771_100:0.05824794295)NA:0.1231821847)NA:-0.001039752511,(Tetraodon-nigroviridis_TETRAODON8_5-4275384-4275614_rcn1_180:0.05978063124,(Gasterosteus-aculeatus_BROADS1_groupII-c12836068-12835800_rcn1_198:0.05803456153,Oryzias-latipes_ASM223467v1_3-c23329716-23329447_ENSORLG00000009881_227:0.01841970355)NA:0.02182643996)NA:0.1168617801)NA:0.03578383066)NA:0.02616694111,(Ornithorhynchus-anatinus_OANA5_3-18033675-18034294_ENSOANG00000015148_872:0.03530791913,(Chelonoidis-abingdonii_ASM359739v1_PKMU01004445.1-651872-652492_ENSCABG00000012666_928:0.01136837898,((Alligator-mississippiensis-N_ASM28112v4_NW017713697.1-28608132-28608752_NONE_919:0.01042787459,(Gallus-gallus_GRCg6a_5-5545349-5545969_ENSGALG00000012121_919:0.004487919125,(Nothoprocta-perdicaria_notPer1_PTEW01000029.1-c3233217-3232597_ENSNPEG00000007456_928:0.00120785751,Calidris-pugnax_ASM143184v1_KQ482227.1-1593784-1594404_ENSCPUG00000017141_919:0.002052342895)NA:0.0004258368605)NA:0.007090727665)NA:0.00254970437,(Sphenodon-punctatus_ASM311381v1_QEPC01008061.1-c692228-691608_ENSSPUG00000004587_914:0.01193042024,(Podarcis-muralis-N_PodMur10_NC041312.1-66434474-66435094_NONE_910:0.004702945707,(Anolis-carolinensis_0_1-60922543-60923163_ENSACAG00000002439_887:0.007803125084,(Python-bivittatus-N_502_NW006532569.1-c68387-67767_NONE_869:0.005869714488,(Protobothrops-mucrosquamatus-N_1-0_NW015388637.1-31923-32543_NONE_860:0.004255434665,(Thamnophis-sirtalis-N_6-0_NW013657925.1-491476-492100_NONE_844:0.00704308904,(Pseudonaja-textilis-N_EBS10Xv2-PRI_NW020769309.1-c4502074-4501454_NONE_860:-5.376022817e-05,Notechis-scutatus_TS10Xv2-PRI_ULFQ01000010.1-15461846-15462466_ENSNSUG00000012105_856:0.001679583299)NA:0.002792870133)NA:0.002342758868)NA:0.004064311952)NA:0.01200118683)NA:0.001430221118)NA:0.01076143652)NA:0.003091423294)NA:0.0008266156293)NA:0.004071281371)NA:0.004245096317)NA:0.007445702926)NA:0.02487789552)NA:0.0002804836039)NA:0.0007860509445)NA:0.0006704919538)NA:0.001042071487)NA:0.002356369757)NA:0.003108907011)NA:0.04811027666)NA:-0.003290971335)NA:0.003828529689)NA:0.001819895114)NA:0.05766247452)NA:0)NA;




################ Settings ################

>Uploaded_your_sequences
agCNE2_Homo-sapiens-hg19_GRCh37_11-32052624-32053243
GAATAAATTATAGATGAAACCCCCATCATATGTTTATAAATACACTAACATTAGCATTTTACTTCCTCATAAATCTGCAGCAAATACTCAGGCACAAGATAGAAAGCCCTGTAAAACAATGATATATTCTCTGCTTGCAGGCATTGACTAGTGGCCCATTCACTCCCGGTGCTGTTCTTCAACCACGCTCCCTCCGCTCATGCCCCGTCATTTAAAATCCATTTTAATTTAAAGATGCACAAGGCAGTGCTCGTGGTACATTTACTCATCCTAGTTATACATCATGGAGCAAGGAAAAGAAAATTGTTTCATCTAGAGATACGGTTCAATGTGGTCACCACTGAACAGTGGAGTAATTACCATATCAGACCCACTCAAAATGCACTCAGGGTGTTCTGTGACCTATCATTTGCTAATCTGCATAGTGAAGTATAGCTTCATAACTATAAATTGCTGACTTAATTAAAACCAAGACCTTTCTGTCATTTAATTACAGGGAGAAAGGTTATTGCTTAAATGCAATTTTCCAAATGTGATTTCTTAACAGTTATTAACTGCTTCACCATCATTTATTGTTTCAGATTTTTCAATTTGAAAATACTTCCCGTGACAGAAGTAAT

>taxonSampling_color
Callorhinchus-milii_Black
Rhincodon-typus-N_Black
Erpetoichthys-calabaricus_Green
Lepisosteus-oculatus_Green
Danio-rerio_Green
Gasterosteus-aculeatus_Green
Tetraodon-nigroviridis_Green
Oryzias-latipes_Green
Latimeria-chalumnae_Purple
Microcaecilia-unicolor-N_Purple
Xenopus-tropicalis_Purple
Sphenodon-punctatus_Orange
Podarcis-muralis-N_Orange
Anolis-carolinensis_Orange
Python-bivittatus-N_Orange
Protobothrops-mucrosquamatus-N_Orange
Thamnophis-sirtalis-N_Orange
Pseudonaja-textilis-N_Orange
Notechis-scutatus_Orange
Chelonoidis-abingdonii_Magenta
Alligator-mississippiensis-N_Magenta
Nothoprocta-perdicaria_Magenta
Gallus-gallus_Magenta
Calidris-pugnax_Magenta
Ornithorhynchus-anatinus_Blue
Monodelphis-domestica_Blue
Choloepus-hoffmanni_Blue
Chrysochloris-asiatica-N_Red
Condylura-cristata-N_Red
Myotis-lucifugus_Blue
Equus-caballus_Blue
Bos-taurus_Blue
Heterocephalus-glaber-male_Red
Nannospalax-galili_Red
Mus-musculus_Blue
Propithecus-coquereli_Blue
Aotus-nancymaae_Blue
Homo-sapiens_Blue

>E-value_threshold_for_reported_sequences
1e-3

>Number_of_hits_to_report_per_genome
2

>TreeSearchMethod
Neighbor-joining method (Saitou and Nei 1986)

>SubstitutionModel
TN93 (Tamura and Nei 1993) + gamma

>Dependencies
BLAST 2.7.1+
MAFFT v7.356b
trimAl 1.2rev59
ape in R, Version: 5.0

