################ Results ################

>Gene_tree_newick
(Callorhinchus-milii_3_KI635862.1-c11080813-11080767_ENSCMIG00000018083_54:0.1232472211,(Bos-taurus_2_15-62763764-62763931_RCN1_208:0.04960706127,((Latimeria-chalumnae_LatCha1_JH126652.1-1345597-1345644_rcn1_61:0.07376351629,(Mus-musculus_GRCm38_2-c105472802-105472730_Rcn1_57:0.00749035413,(Equus-caballus_0_7-99973219-99973327_RCN1_62:0.2821567254,Heterocephalus-glaber-male_0_JH173915.1-827799-827940_ENSHGLG00100011830_68:0.08512908424)NA:-0.00266021178)NA:0.05044558516)NA:0.02318429401,(Choloepus-hoffmanni_choHof1_scaffold15442-c11455-11292_NONE_216:0.05207777271,(Myotis-lucifugus_0_GL429859-3819041-3819209_ENSMLUG00000009140_239:0.008437545268,((Propithecus-coquereli_0_KQ022625.1-c4964973-4964813_ENSPCOG00000015851_233:0.002500227963,(Nannospalax-galili_0_KL199188.1-5265902-5266057_Rcn1_181:0.01254256231,(Condylura-cristata-N_ConCri1-0_NW004567116.1-c18323970-18323802_NONE_224:-0.02592262235,(Notechis-scutatus_TS10Xv2-PRI_ULFQ01000080.1-2650480-2650520_POP4_48:0.167546111,Mus-musculus_GRCm38_2-c105472698-105472614_Rcn1_92:0.01361418093)NA:0.1110017218)NA:0.03801579232)NA:0.0204076327)NA:0.0003097318502,((Aotus-nancymaae_0_KZ197012.1-7270231-7270399_ENSANAG00000027955_270:0.0004673747475,(Homo-sapiens_GRCh38_11-32003264-32003431_RCN1_304:0,YOURSEQ1_agCNE3_Homo-sapiens-hg19_GRCh37_11-32024810-32024977:0)NA:0.009471570923)NA:0.01092885341,(Chrysochloris-asiatica-N_ChrAsi1-0_NW006408590.1-7561948-7562115_NONE_232:0.03703724812,((Ornithorhynchus-anatinus_OANA5_3-17997915-17997949_ENSOANG00000015148_51:0,Ornithorhynchus-anatinus_OANA5_3-18001363-18001397_ENSOANG00000015148_51:0)NA:0.05259693975,(Monodelphis-domestica_monDom5_5-267663115-267663272_ENSMODG00000009625_104:0.14284178,((Chelonoidis-abingdonii_ASM359739v1_PKMU01004445.1-617235-617348_ENSCABG00000012666_104:0.0463223845,(Alligator-mississippiensis-N_ASM28112v4_NW017713697.1-28570648-28570761_NONE_117:0.006973631746,(Sphenodon-punctatus_ASM311381v1_QEPC01008061.1-c744574-744455_ENSSPUG00000004587_92:0.08627115517,(Calidris-pugnax_ASM143184v1_KQ482227.1-1567467-1567580_ENSCPUG00000017141_104:0.007106144768,(Nothoprocta-perdicaria_notPer1_PTEW01000029.1-c3252704-3252585_ENSNPEG00000007456_101:0.03301294859,Gallus-gallus_GRCg6a_5-5521780-5521897_ENSGALG00000012121_93:0.04152473213)NA:0.006716947388)NA:0.0338587564)NA:0.01265556091)NA:0.008400874125)NA:0.01266382019,(Protobothrops-mucrosquamatus-N_1-0_NW015388637.1-16890-16931_NONE_54:-0.03983515586,((Python-bivittatus-N_502_NW006532569.1-c84839-84735_NONE_59:0.07023579045,Protobothrops-mucrosquamatus-N_1-0_NW015387874.1-c5562-5521_NONE_54:-0.07023579045)NA:0.00106490175,(Podarcis-muralis-N_PodMur10_NC041312.1-66416723-66416826_NONE_65:0.0621278443,(Thamnophis-sirtalis-N_6-0_NW013657925.1-471788-471892_NONE_64:-0.005190083623,(Pseudonaja-textilis-N_EBS10Xv2-PRI_NW020769309.1-c4519827-4519723_NONE_64:0,Notechis-scutatus_TS10Xv2-PRI_ULFQ01000010.1-15443700-15443804_ENSNSUG00000012105_64:0)NA:0.0249642535)NA:0.04246225964)NA:0.02487151063)NA:0.02493848397)NA:0.0512834448)NA:0.06161161624)NA:0.0100758245)NA:0.03300818009)NA:0.01317336515)NA:0.006116470838)NA:0.008247138712)NA:0.006109940596)NA:0.01033496817)NA:0.02088391589)NA:0)NA;




################ Settings ################

>Uploaded_your_sequences
agCNE3_Homo-sapiens-hg19_GRCh37_11-32024810-32024977
TTACCCTGTGAAAGCCCCATCACTCACAGAAACTATTGCTGAGGAGGAGAGGATGATTTTATTTAGCTAATTTTTAACAAATCTCCAATGTTGCCCACATCTCCTGAAGCTGGGAGGAGGGATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA

>taxonSampling_color
Callorhinchus-milii_Black
Rhincodon-typus-N_Black
Erpetoichthys-calabaricus_Green
Lepisosteus-oculatus_Green
Danio-rerio_Green
Gasterosteus-aculeatus_Green
Tetraodon-nigroviridis_Green
Oryzias-latipes_Green
Latimeria-chalumnae_Purple
Microcaecilia-unicolor-N_Purple
Xenopus-tropicalis_Purple
Sphenodon-punctatus_Orange
Podarcis-muralis-N_Orange
Anolis-carolinensis_Orange
Python-bivittatus-N_Orange
Protobothrops-mucrosquamatus-N_Orange
Thamnophis-sirtalis-N_Orange
Pseudonaja-textilis-N_Orange
Notechis-scutatus_Orange
Chelonoidis-abingdonii_Magenta
Alligator-mississippiensis-N_Magenta
Nothoprocta-perdicaria_Magenta
Gallus-gallus_Magenta
Calidris-pugnax_Magenta
Ornithorhynchus-anatinus_Blue
Monodelphis-domestica_Blue
Choloepus-hoffmanni_Blue
Chrysochloris-asiatica-N_Red
Condylura-cristata-N_Red
Myotis-lucifugus_Blue
Equus-caballus_Blue
Bos-taurus_Blue
Heterocephalus-glaber-male_Red
Nannospalax-galili_Red
Mus-musculus_Blue
Propithecus-coquereli_Blue
Aotus-nancymaae_Blue
Homo-sapiens_Blue

>E-value_threshold_for_reported_sequences
1e-3

>Number_of_hits_to_report_per_genome
2

>TreeSearchMethod
Neighbor-joining method (Saitou and Nei 1986)

>SubstitutionModel
TN93 (Tamura and Nei 1993) + gamma

>Dependencies
BLAST 2.7.1+
MAFFT v7.356b
trimAl 1.2rev59
ape in R, Version: 5.0

