Query sequences:
>agCNE3_Homo-sapiens-hg19_GRCh37_11-32024810-32024977
TTACCCTGTGAAAGCCCCATCACTCACAGAAACTATTGCTGAGGAGGAGAGGATGATTTTATTTAGCTAATTTTTAACAAATCTCCAATG
TTGCCCACATCTCCTGAAGCTGGGAGGAGGGATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
Human SNP in dbSNP:
11:32003264-32003431
# of blast hits:
Callorhinchus-milii_ :1
Rhincodon-typus-N_ :0
Erpetoichthys-calabaricus_ :0
Lepisosteus-oculatus_ :0
Danio-rerio_ :0
Gasterosteus-aculeatus_ :0
Tetraodon-nigroviridis_ :0
Oryzias-latipes_ :0
Latimeria-chalumnae_ :1
Microcaecilia-unicolor-N_ :0
Xenopus-tropicalis_ :0
Sphenodon-punctatus_ :1
Podarcis-muralis-N_ :1
Anolis-carolinensis_ :0
Python-bivittatus-N_ :1
Protobothrops-mucrosquamatus-N_ :2
Thamnophis-sirtalis-N_ :1
Pseudonaja-textilis-N_ :1
Notechis-scutatus_ :2
Chelonoidis-abingdonii_ :1
Alligator-mississippiensis-N_ :1
Nothoprocta-perdicaria_ :1
Gallus-gallus_ :1
Calidris-pugnax_ :1
Ornithorhynchus-anatinus_ :2
Monodelphis-domestica_ :1
Choloepus-hoffmanni_ :1
Chrysochloris-asiatica-N_ :1
Condylura-cristata-N_ :1
Myotis-lucifugus_ :1
Equus-caballus_ :1
Bos-taurus_ :1
Heterocephalus-glaber-male_ :1
Nannospalax-galili_ :1
Mus-musculus_ :2
Propithecus-coquereli_ :1
Aotus-nancymaae_ :1
Homo-sapiens_ :1
Alignment of blast hits:
speciesName_database_chr-start-end_geneName
177
1
Used4treeSearch 000000000000000000000000000000000000000000000000000000000000000000011111111111100001111111
Callorhinchus-milii_3_KI635862.1-c11080813-11080767_ENSCMIG00000018083_54 ------------------------------------------------------------------------------------------
Latimeria-chalumnae_LatCha1_JH126652.1-1345597-1345644_rcn1_61 ------------------------------------------------------------------------------------------
Sphenodon-punctatus_ASM311381v1_QEPC01008061.1-c744574-744455_ENSSPUG00000004587_92 --------------------------------------------------AG---GACAATTTTATCTAACAGATTTTT----AACAAAC
Podarcis-muralis-N_PodMur10_NC041312.1-66416723-66416826_NONE_65 -------------------------------------------------------------------TAGCTAATTTCT----AATGAAG
Python-bivittatus-N_502_NW006532569.1-c84839-84735_NONE_59 -------------------------------------------------------------------TAGCTAATTTGC----AACAACG
Protobothrops-mucrosquamatus-N_1-0_NW015388637.1-16890-16931_NONE_54 ------------------------------------------------------------------------------------------
Protobothrops-mucrosquamatus-N_1-0_NW015387874.1-c5562-5521_NONE_54 ------------------------------------------------------------------------------------------
Thamnophis-sirtalis-N_6-0_NW013657925.1-471788-471892_NONE_64 -------------------------------------------------------------------TAGCTAATTTCC----AATAATG
Pseudonaja-textilis-N_EBS10Xv2-PRI_NW020769309.1-c4519827-4519723_NONE_64 -------------------------------------------------------------------TAGCTAATTTCC----AATAATG
Notechis-scutatus_TS10Xv2-PRI_ULFQ01000010.1-15443700-15443804_ENSNSUG00000012105_64 -------------------------------------------------------------------TAGCTAATTTCC----AATAATG
Notechis-scutatus_TS10Xv2-PRI_ULFQ01000080.1-2650480-2650520_POP4_48 ------------------------------------------------------------TTTTATTTACTTAATTTTT----ACTAAAT
Chelonoidis-abingdonii_ASM359739v1_PKMU01004445.1-617235-617348_ENSCABG00000012666_104 -----------------------------------------------------------ATTTTATCTAACTAATTTTA----AACAAAT
Alligator-mississippiensis-N_ASM28112v4_NW017713697.1-28570648-28570761_NONE_117 -----------------------------------------------------------ATTTTATCTAACTAATTTTT----AACAAAT
Nothoprocta-perdicaria_notPer1_PTEW01000029.1-c3252704-3252585_ENSNPEG00000007456_101 --------------------------------------------------AG---GACAATTTTATCTAACTGATTTCT----AACAAAT
Gallus-gallus_GRCg6a_5-5521780-5521897_ENSGALG00000012121_93 -------------------------------------------------------GATAATTTTATCCAACCGATTTTT----AACAGAT
Calidris-pugnax_ASM143184v1_KQ482227.1-1567467-1567580_ENSCPUG00000017141_104 -----------------------------------------------------------ATTTTATCTAACCAATTTTT----AACATAT
Ornithorhynchus-anatinus_OANA5_3-17997915-17997949_ENSOANG00000015148_51 ------------------------------------------------------------------------------------------
Ornithorhynchus-anatinus_OANA5_3-18001363-18001397_ENSOANG00000015148_51 ------------------------------------------------------------------------------------------
Monodelphis-domestica_monDom5_5-267663115-267663272_ENSMODG00000009625_104 ---------G-AAAGACCCATCGCTCACCACCACTATTTCTTTGGG---------TACAATCTTATTTAACTAATGTTTTAAAAACAAAT
Choloepus-hoffmanni_choHof1_scaffold15442-c11455-11292_NONE_216 -----CTATG-CAAGCCCCATCACTCACGGTAACTATTGCTGGGGAGGAGGG---GGTGATTTTATTTAGCTAATTTTT---AAACAAAT
Chrysochloris-asiatica-N_ChrAsi1-0_NW006408590.1-7561948-7562115_NONE_232 TTACTCTATG-AAAGCCCCATCACTCACAGAAACTATTGCTGATTTGGAGGG---GGCAATTTTATTTAGCTAATTTTT----AACAAAT
Condylura-cristata-N_ConCri1-0_NW004567116.1-c18323970-18323802_NONE_224 TTACCCCATG-AAAGCCCCATCACTCACAGAAACTATTGCAGGGGAGGAGGGA--GGCATTTTTATTTAGTTAATTTTT----AACAAAT
Myotis-lucifugus_0_GL429859-3819041-3819209_ENSMLUG00000009140_239 TTACCCTAATGAAAGCCCCATCACTCACAAAAACTATTGCTAGGGAGGAGGG---GGCAATTTTATTTAGCTAATTTTT----AACAAAT
Equus-caballus_0_7-99973219-99973327_RCN1_62 ----CCTGTG-AAAGCCCCGTCGCTTGCAGACTCCAGTGCTGGGGAGGAGGAG--GGCAACTCGGTGAAGCTAATTTCT----AACGAAT
Bos-taurus_2_15-62763764-62763931_RCN1_208 TTACCCAGTG-AAAGCTCCATCAGTCACAGAAACTATTGCTGGGGAGGAGGG----GAAATTTTATTTAGCTAATTTTT---AAACAAAT
Heterocephalus-glaber-male_0_JH173915.1-827799-827940_ENSHGLG00100011830_68 --ACCCAGTG-AAAGCTCTGTCACTCCCAGGAGCTG-CGGTGGGGAGGTGGG---GACAGTCCCCTTCTGCCAATTTT-----AACAACT
Nannospalax-galili_0_KL199188.1-5265902-5266057_Rcn1_181 ----------------CCCATCACTCATAGACTCTGTCGTTGGGGAGGAGGAGGGGGCCGTCTTATTTAGCTAATTTTT----AACAAAT
Mus-musculus_GRCm38_2-c105472698-105472614_Rcn1_92 ------------------------------------------------------------------------------------------
Mus-musculus_GRCm38_2-c105472802-105472730_Rcn1_57 TTACACTGTG-AAAACTCCATCACTCAGAGAAATTGTGACAGGGAGAGGAGGG--GACTATCTTATTTAGCTATTT--------------
Propithecus-coquereli_0_KQ022625.1-c4964973-4964813_ENSPCOG00000015851_233 TTACCTTGTG-AAAGCCCCATCACTCACAGAAACTATTGCTGGGGAGGAGGG---CACAATTTTATTTAGCTAATTTTT----AACAAAT
Aotus-nancymaae_0_KZ197012.1-7270231-7270399_ENSANAG00000027955_270 TTACCCCATGAAAAGCCCCATCACTCACAGAAACTATTGCCGAGGAGGAGAG---AACGATTTTATTTAGCTAATTTTT----AACAAAT
Homo-sapiens_GRCh38_11-32003264-32003431_RCN1_304 TTACCCTGTG-AAAGCCCCATCACTCACAGAAACTATTGCTGAGGAGGAGAG---GATGATTTTATTTAGCTAATTTTT----AACAAAT
YOURSEQ1_agCNE3_Homo-sapiens-hg19_GRCh37_11-32024810-32024977 TTACCCTGTG-AAAGCCCCATCACTCACAGAAACTATTGCTGAGGAGGAGAG---GATGATTTTATTTAGCTAATTTTT----AACAAAT
91
Used4treeSearch 101111111111111111111111111111101111101111111111111111111111111111111111111111111111111
Callorhinchus-milii_3_KI635862.1-c11080813-11080767_ENSCMIG00000018083_54 ----------------------------------------ATAATCAAGTCAAGCACCATTGACTGTAAGCAGAGTGAACTATGGAA
Latimeria-chalumnae_LatCha1_JH126652.1-1345597-1345644_rcn1_61 ---------------------------------------GATAATCAAGTCAAGCACCATTGACTATGAGTATAGCAAAGTGTGGAA
Sphenodon-punctatus_ASM311381v1_QEPC01008061.1-c744574-744455_ENSSPUG00000004587_92 CGAAAACATTGCCAACATCTACTTTAGCTGTGAGGAACTGGTAATCAAGTCAAGCATCATTGGCTATGAGAATAGTGAGCTGTAGAA
Podarcis-muralis-N_PodMur10_NC041312.1-66416723-66416826_NONE_65 C-AAAACACTGTCCACATCTTCTCTTACTGTGAGGAA-TGGTAATCAGGTCAAGCACCACTGGCTATGAGAATAGTGAACGGTAGAA
Python-bivittatus-N_502_NW006532569.1-c84839-84735_NONE_59 C-AAAACATTGTCTACATCTTCTCTGATTGTGAGGAATTGTTAATCAGGTCAAGCACCATTGGTTATGAGAATAGTGAACTGTAGAA
Protobothrops-mucrosquamatus-N_1-0_NW015388637.1-16890-16931_NONE_54 -----------------------------------------TAATCAGGTCAAGCACCATTGGTTATGAGAATAGTGAACTGT----
Protobothrops-mucrosquamatus-N_1-0_NW015387874.1-c5562-5521_NONE_54 -----------------------------------------TAATCAGGTCAAGCACCATTGGTTATGAGAATAGTGAACTGT----
Thamnophis-sirtalis-N_6-0_NW013657925.1-471788-471892_NONE_64 C-AAAACGTTGTCTACATCTTCTCTGATTGTGAGGAATTGGTAATCAGGTCAAGCACCATTGGCTATGAGAATAGTGAACTGTAGAA
Pseudonaja-textilis-N_EBS10Xv2-PRI_NW020769309.1-c4519827-4519723_NONE_64 C-ACAACGATGTCTACATCTTCTCTGATTGTGAGGAATTGGTAATCAGGTCAAGCACCATTGGCTATGAGAATAGTGAACTGTAGAA
Notechis-scutatus_TS10Xv2-PRI_ULFQ01000010.1-15443700-15443804_ENSNSUG00000012105_64 C-ACAACGATGTCTACATCTTCTCTGATTGTGAGGAATTGGTAATCAGGTCAAGCACCATTGGCTATGAGAATAGTGAACTGTAGAA
Notechis-scutatus_TS10Xv2-PRI_ULFQ01000080.1-2650480-2650520_POP4_48 TTACAATGTTGCCCA------------------------------------------------------------------------
Chelonoidis-abingdonii_ASM359739v1_PKMU01004445.1-617235-617348_ENSCABG00000012666_104 CTAAACCACTGCCCAGATCTACTCTGGCTGTGAGGAACTGGTAATCAAGTCAAGCACCATTGACTATGAGAATAGTGAACTGTAGAA
Alligator-mississippiensis-N_ASM28112v4_NW017713697.1-28570648-28570761_NONE_117 TTAAAACATTGCCCACATCTACTCTAACTGTGAGGAACTGGTAATCAAGTCAAGCACCATTGACTATGAGAATAGTGAACTGTAGAA
Nothoprocta-perdicaria_notPer1_PTEW01000029.1-c3252704-3252585_ENSNPEG00000007456_101 TTAAAACATTGCCCTTATCTACTCTAGCTATGAGGCACTGGTAATCAAGTCAAGCACCATTGACTATGAGAATAGTGAACTGTAGAA
Gallus-gallus_GRCg6a_5-5521780-5521897_ENSGALG00000012121_93 TTAAAACATTGCCCATATCTACTTTGGCTATGAGGCACTGGTAATCAAGTCAAGCACCATTGACTATGAGAATAGTGAACTGTAGAA
Calidris-pugnax_ASM143184v1_KQ482227.1-1567467-1567580_ENSCPUG00000017141_104 TTAAAACATTGCCCATATCTACTCTAGCTATGAGGCACTGGTAATCAAGTCAAGCACCATTGACTATGAGAATAGTGAACTGTAGAA
Ornithorhynchus-anatinus_OANA5_3-17997915-17997949_ENSOANG00000015148_51 ------------------------------------------------GTCAAGCGCCGTTGACTAGGAGAATAGTGAAATGT----
Ornithorhynchus-anatinus_OANA5_3-18001363-18001397_ENSOANG00000015148_51 ------------------------------------------------GTCAAGCGCCGTTGACTAGGAGAATAGTGAAATGT----
Monodelphis-domestica_monDom5_5-267663115-267663272_ENSMODG00000009625_104 CTAAAATGGTGCCCGCATCTCCTCCAGCCTTGAGGACGGAGTAATCAAGTCAAGCGCCATTGACTATGGGGACAGTGAACTGTAGAA
Choloepus-hoffmanni_choHof1_scaffold15442-c11455-11292_NONE_216 CTCAGATGCTGCCTACATCTCCAGAAGCCCGGAGGAA-GGATAATCAAGTTAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
Chrysochloris-asiatica-N_ChrAsi1-0_NW006408590.1-7561948-7562115_NONE_232 CTATAGTGTTGCCCACATCTCTTGAAGCTCGGAGGAA-GTATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
Condylura-cristata-N_ConCri1-0_NW004567116.1-c18323970-18323802_NONE_224 TTCAAATGTTACCCACATCTCCTGAAGCCCAGAGGAA-GGATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
Myotis-lucifugus_0_GL429859-3819041-3819209_ENSMLUG00000009140_239 CTCAAATGTTGCCCACATCTCCTGAAGCCCGGAGGAA-GGATAATCAAGTCAAGCCCCATTGACTAGGAGGATAGTGAACTGTGGAA
Equus-caballus_0_7-99973219-99973327_RCN1_62 CTCAAGTGTCGCC-ACGTCTTCCGAAGCCGG--------------------------------------------------------
Bos-taurus_2_15-62763764-62763931_RCN1_208 CTCAAACATTCCCCACATCTCCTGAAGCCTCGAGGGA-GAATAATCAAGTCAAGCCCCATTGACTAGAAGAATAGTGAAGTGTGGAA
Heterocephalus-glaber-male_0_JH173915.1-827799-827940_ENSHGLG00100011830_68 CTCAAGTGTTG---AGGTCTCCCAAAGCCCTGAGGAA-GGATAATCAAGTCCAGCCCCATTGCCCAGG-------------------
Nannospalax-galili_0_KL199188.1-5265902-5266057_Rcn1_181 CTCAAATGTTGCCCACATCTCCGGAAGCCTAGAGGAA-GGATAATCAAGTCAAGCCCCATTGACTAGGAGAATGGTGAACTGTGGAA
Mus-musculus_GRCm38_2-c105472698-105472614_Rcn1_92 -TCAAATGTTGCCCACATTTCCTGAATCCCAGAGGAA-GGATAATCAAGTCAAGTCCCTTTGTCTAGGAGAATGAAGGACTGTGGAA
Mus-musculus_GRCm38_2-c105472802-105472730_Rcn1_57 ---------------------------------------------------------------------------------------
Propithecus-coquereli_0_KQ022625.1-c4964973-4964813_ENSPCOG00000015851_233 CTCAAACGTTGCCCACATCTCCTGA-------AGGAA-GGATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
Aotus-nancymaae_0_KZ197012.1-7270231-7270399_ENSANAG00000027955_270 CTCCAATGTTGCCCACATCTCCTGAAGCTGGGAGGAA-GGATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
Homo-sapiens_GRCh38_11-32003264-32003431_RCN1_304 CTCCAATGTTGCCCACATCTCCTGAAGCTGGGAGGAG-GGATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
YOURSEQ1_agCNE3_Homo-sapiens-hg19_GRCh37_11-32024810-32024977 CTCCAATGTTGCCCACATCTCCTGAAGCTGGGAGGAG-GGATAATCAAGTCAAGCCCCATTGACTAGGAGAATAGTGAACTGTGGAA
################ Settings ################
Taxon sampling:
Callorhinchus-milii_Black
Rhincodon-typus-N_Black
Erpetoichthys-calabaricus_Green
Lepisosteus-oculatus_Green
Danio-rerio_Green
Gasterosteus-aculeatus_Green
Tetraodon-nigroviridis_Green
Oryzias-latipes_Green
Latimeria-chalumnae_Purple
Microcaecilia-unicolor-N_Purple
Xenopus-tropicalis_Purple
Sphenodon-punctatus_Orange
Podarcis-muralis-N_Orange
Anolis-carolinensis_Orange
Python-bivittatus-N_Orange
Protobothrops-mucrosquamatus-N_Orange
Thamnophis-sirtalis-N_Orange
Pseudonaja-textilis-N_Orange
Notechis-scutatus_Orange
Chelonoidis-abingdonii_Magenta
Alligator-mississippiensis-N_Magenta
Nothoprocta-perdicaria_Magenta
Gallus-gallus_Magenta
Calidris-pugnax_Magenta
Ornithorhynchus-anatinus_Blue
Monodelphis-domestica_Blue
Choloepus-hoffmanni_Blue
Chrysochloris-asiatica-N_Red
Condylura-cristata-N_Red
Myotis-lucifugus_Blue
Equus-caballus_Blue
Bos-taurus_Blue
Heterocephalus-glaber-male_Red
Nannospalax-galili_Red
Mus-musculus_Blue
Propithecus-coquereli_Blue
Aotus-nancymaae_Blue
Homo-sapiens_Blue
>blastn_task
blastn
>blastn_word_size
11
>blastn_E-value_threshold_for_reported_sequences
1e-3
>Number_of_hits_to_report_per_genome
2
Color pattern:
Vertebrata
>TreeSearchMethod
Neighbor-joining method (Saitou and Nei 1986)
>SubstitutionModel
TN93 (Tamura and Nei 1993) + gamma
>Dependencies
BLAST 2.7.1+
MAFFT v7.356b
trimAl 1.2rev59
ape in R, Version: 5.0
Analysis time: 29.7 seconds
Database:
Callorhinchus-milii_ :Callorhinchus_milii.Callorhinchus_milii-6.1.3.dna_rm.toplevel.fa
Rhincodon-typus-N_ :Rhincodon-typus-N_GCF_001642345.1_ASM164234.v2.dna_nb.genomic.fna
Erpetoichthys-calabaricus_ :Erpetoichthys_calabaricus.fErpCal1.1.dna_rm.toplevel.fa
Lepisosteus-oculatus_ :Lepisosteus_oculatus.LepOcu1.dna_rm.toplevel.fa
Danio-rerio_ :Danio_rerio.GRCz11.dna_rm.primary_assembly.fa
Gasterosteus-aculeatus_ :Gasterosteus_aculeatus.BROADS1.dna_rm.toplevel.fa
Tetraodon-nigroviridis_ :Tetraodon_nigroviridis.TETRAODON8.dna_rm.toplevel.fa
Oryzias-latipes_ :Oryzias_latipes.ASM223467v1.dna_rm.toplevel.fa
Latimeria-chalumnae_ :Latimeria_chalumnae.LatCha1.dna_rm.toplevel.fa
Microcaecilia-unicolor-N_ :Microcaecilia-unicolor-N.GCF_901765095-1.aMicUni1-1.dna_nb.genomic.fna
Xenopus-tropicalis_ :Xenopus-tropicalis.v91.dna_rm.toplevel.fa
Sphenodon-punctatus_ :Sphenodon_punctatus.ASM311381v1.dna_rm.toplevel.fa
Podarcis-muralis-N_ :Podarcis-muralis-N.GCF_004329235-1.PodMur10.dna_nb.genomic.fna
Anolis-carolinensis_ :Anolis_carolinensis.AnoCar2.0.dna_rm.toplevel.fa
Python-bivittatus-N_ :Python-molurus-bivittatus-N.GCF_000186305-1_.502.dna_nb.genomic.fna
Protobothrops-mucrosquamatus-N_ :Protobothrops-mucrosquamatus-N.GCF_001527695-2.1-0.dna_nb.genomic.fna
Thamnophis-sirtalis-N_ :Thamnophis-sirtalis-N.GCF_001077635-1.6-0.dna_nb.genomic.fna
Pseudonaja-textilis-N_ :Pseudonaja-textilis-N.GCF_900518735-1.EBS10Xv2-PRI.dna_nb.genomic.fna
Notechis-scutatus_ :Notechis_scutatus.TS10Xv2-PRI.dna_rm.toplevel.fa
Chelonoidis-abingdonii_ :Chelonoidis_abingdonii.ASM359739v1.dna_rm.toplevel.fa
Alligator-mississippiensis-N_ :Alligator-mississippiensis-N.GCF_000281125-3.ASM28112v4.dna_nb.genomic.fna
Nothoprocta-perdicaria_ :Nothoprocta_perdicaria.notPer1.dna_rm.toplevel.fa
Gallus-gallus_ :Gallus_gallus.GRCg6a.dna_rm.toplevel.fa
Calidris-pugnax_ :Calidris_pugnax.ASM143184v1.dna_rm.toplevel.fa
Ornithorhynchus-anatinus_ :Ornithorhynchus_anatinus.OANA5.dna_rm.toplevel.fa
Monodelphis-domestica_ :Monodelphis_domestica.monDom5.dna_rm.toplevel.fa
Choloepus-hoffmanni_ :Choloepus_hoffmanni.choHof1.dna_rm.toplevel.fa
Chrysochloris-asiatica-N_ :Chrysochloris-asiatica-N.GCF_000296735-1.ChrAsi1-0.dna_nb.genomic.fna
Condylura-cristata-N_ :Condylura-cristata-N.GCF_000260355-1.ConCri1-0.dna_nb.genomic.fna
Myotis-lucifugus_ :Myotis_lucifugus.Myoluc2.0.dna_rm.toplevel.fa
Equus-caballus_ :Equus_caballus.EquCab3.0.dna_rm.toplevel.fa
Bos-taurus_ :Bos_taurus.ARS-UCD1.2.dna_rm.toplevel.fa
Heterocephalus-glaber-male_ :Heterocephalus_glaber_male.HetGla_1.0.dna_rm.toplevel.fa
Nannospalax-galili_ :Nannospalax_galili.S.galili_v1.0.dna_rm.toplevel.fa
Mus-musculus_ :Mus_musculus.GRCm38.dna_rm.primary_assembly.fa
Propithecus-coquereli_ :Propithecus_coquereli.Pcoq_1.0.dna_rm.toplevel.fa
Aotus-nancymaae_ :Aotus_nancymaae.Anan_2.0.dna_rm.toplevel.fa
Homo-sapiens_ :Homo_sapiens.GRCh38.dna_rm.primary_assembly.fa