Classification
(Last common ancestor containing CNS) |
Comparison |
Sequence |
# of CNS |
Data source |
Vertebrata
| 18 vertebrates
|
Human(hg19) |
4351 |
UCNEbase:
Human UCNEs fasta (hg19 assembly) |
| Gnathostomata |
19 gnathostomes |
Human(hg19) |
208 in Hox. |
Matsunami et al. 10 |
| Bony vertebrates |
Human, Zebrafish |
Human(hg38) |
18,852 |
ANCORA:
HCNE_hg38_danRer7_70pc_50col.bed.gz |
| Actinopterygii |
|
|
|
|
| Clupeocephala |
Zebrafish,
Stickleback |
Zebrafish(danRer10) |
200,099 |
ANCORA:
HCNE_danRer10_gasAcu1_70pc_30col.bed.gz |
|
Zebrafish vs
Stickleback |
Stickleback(BROADS1) |
175,168 |
ANCORA:
HCNE_danRer10_gasAcu1_70pc_30col.bed.gz |
| Sarcopterygii |
8 tetrapods |
Human ortho(GRCh37.p13) |
7650 |
Matsunami & Saitou 13 |
| |
8 tetrapods |
Human para(GRCh37.p13) |
309 |
Matsunami & Saitou 13 |
| Amniota |
Human, Chicken |
Human(hg38) |
12,041 |
ANCORA:
HCNE_hg38_galGal4_100pc_50col.bed |
| Mammalia |
20 mammals
(phastCons20way) |
Human(hg38) |
2752 |
UCSC Genome Browser Table Browser |
| Boreoeutheria |
Human, Dog |
Human(hg38) |
95,462 |
ANCORA:
HCNE_hg38_canFam3_100pc_50col.bed.gz |
| Laurasiatheria |
Dog, Horse |
Dog(canFam3) |
5,284,452 |
ANCORA:
HCNE_canFam3_equCab2_80pc_50col.bed.gz |
| |
Dog, Horse |
Dog(canFam3) |
126,218 |
ANCORA:
HCNE_canFam3_equCab2_100pc_50col.bed.gz |
| Euarchontoglires |
Human, Mouse |
Human(hg38) |
946,151 |
ANCORA:
HCNE_hg38_mm10_80pc_50col.bed.gz |
| |
Human, Rat, Mouse |
Human(hg19) |
481 |
Bejerano et al 04 |
| Rodentia |
Mouse, Rat |
Mouse(mm9),
Mouse(mm10) |
21,128 |
Takahashi & Saitou 12 |
| Primates |
|
|
|
|
| Simiiformes |
Human, Marmoset |
Human(hg19),
Human(hg38) |
8,198
|
Takahashi & Saitou 12 |
| Catarrhini |
|
|
|
|
| Hominoidea |
5 hominoids |
Human(GRCh37.p13) |
679 |
Saber and Saitou 17 |
| Hylobatidae |
|
|
|
|
| Hominidae |
4 hominids |
Human(GRCh37.p13) |
1,658 |
Saber et al 16 |
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Bulk download (308MB) |
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