| Number of queries |
|
| |
| (2) Databases |
|
| Anonymous DB (uploaded sequences) |
|
| -num_alignments:
# of hits for each query sequence |
|
| -evalue: E-value threshold for reported sequences |
|
| Pre-installed DB |
| MIDORI2: (mtDNA 15 gene sequences) |
|
| -num_alignments: |
| Species DB (MIDORI2, longest) |
|
| Haplotype DB (MIDORI2, uniq) |
|
| -evalue: |
|
| User DB |
|
| Example: MiFish DB
|
|
| -num_alignments: |
|
| -evalue: |
|
| |
| (3) Measure of Confidence |
| Bootstrap analysis: Branch confidences in a phylogenetic tree |
|