LSU reference and example data for phyloBARCODER (public beta)
Shirouzu T, Matsuoka S, Doi H, Nagata N, Ushio M, Hosaka K (2020). Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms. Scientific Reports 10:3057. https://doi.org/10.1038/s41598-020-59620-0
The article and supplementary information are licensed CC BY 4.0: https://creativecommons.org/licenses/by/4.0/
Nucleotide sequences and taxonomy retrieved from NCBI/INSDC using accessions in Supplementary Table 1. NCBI places no restrictions on use or distribution of its molecular data, but does not transfer third-party rights. See the NCBI disclaimer and data policy: https://www.ncbi.nlm.nih.gov/home/about/policies/
Modifications: LSU regions selected from feature annotations or detected with ITSx 1.1.3; records lacking a detectable LSU region excluded; taxonomy mapped to explicit ranks; BLAST index generated. The 27 eDNA OTUs are retained as examples and excluded from the reference DB. Source accession versions and extraction provenance are preserved.
ITSx: Bengtsson-Palme et al. (2013), doi:10.1111/2041-210X.12073.
This small library is focused on Dacrymycetes and is not a comprehensive fungal LSU database. No endorsement by data providers is implied.